From: Naveed A Nadvi
Date: 4 March 2012 04:07
Hello everyone,
I was wondering if there is any information available regarding the range of Ca-to-Ca distances between two cysteine residues forming disulfide bonds. Is there any software available for analysing the PDB for this kind of information? Some old textbooks suggest a distance of 4.4-6.8 A. I would very much appreciate any comments or suggestions you may have.
Regards,
Naveed
Faculty of Pharmacy,
The University of Sydney
----------
From: Frederic VELLIEUX
I'd google for "Bart Hazes" and "SSBOND" myself. There is (or was) a server, and the publication is Prot. Eng. 1988, 119, 25 (PMID 3244694). The server seems to be down or has moved.
HTH, Fred.
>
----------
From: Ed Pozharski
If you are looking for predicting disulfide bonds, then this may be
useful
http://lmgtfy.com/?q=predict+disulfide+bonds
Cheers,
Ed.
--
Hurry up, before we all come back to our senses!
Julian, King of Lemurs
----------
From: Bart Hazes
Hi Fred,
The SSBOND server has indeed been moved as we have relocated to a new building. SSBOND is still available at the new server address: http://hazeslab.med.ualberta.ca/forms/ssbond.html
This was my first ever program,with help from Bauke Dijkstra, and I was pleasantly surprised how many messages I got after the server relocation. SSBOND will soon get some competition for most used service as I am about to release some bioinformatics services.
Bart
----------
From: Francois Berenger
I wonder if it's not in the output of pisa from ccp4mg.
Date: 4 March 2012 04:07
Hello everyone,
I was wondering if there is any information available regarding the range of Ca-to-Ca distances between two cysteine residues forming disulfide bonds. Is there any software available for analysing the PDB for this kind of information? Some old textbooks suggest a distance of 4.4-6.8 A. I would very much appreciate any comments or suggestions you may have.
Regards,
Naveed
Faculty of Pharmacy,
The University of Sydney
----------
From: Frederic VELLIEUX
I'd google for "Bart Hazes" and "SSBOND" myself. There is (or was) a server, and the publication is Prot. Eng. 1988, 119, 25 (PMID 3244694). The server seems to be down or has moved.
HTH, Fred.
>
----------
From: Ed Pozharski
If you are looking for predicting disulfide bonds, then this may be
useful
http://lmgtfy.com/?q=predict+disulfide+bonds
Cheers,
Ed.
--
Hurry up, before we all come back to our senses!
Julian, King of Lemurs
----------
From: Bart Hazes
Hi Fred,
The SSBOND server has indeed been moved as we have relocated to a new building. SSBOND is still available at the new server address: http://hazeslab.med.ualberta.ca/forms/ssbond.html
This was my first ever program,with help from Bauke Dijkstra, and I was pleasantly surprised how many messages I got after the server relocation. SSBOND will soon get some competition for most used service as I am about to release some bioinformatics services.
Bart
----------
From: Francois Berenger
I wonder if it's not in the output of pisa from ccp4mg.
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