From: Stephen Cusack
Date: 26 August 2011 10:25
We have structures of two states of a large multi-domain protein in which domain
movements of up to 30 degrees are observed. Is there a programme available which
attempts to determine rigid-body units and hinge regions in an 'unbiased' way?
thanks for your suggestions,
Stephen Cusack
Date: 26 August 2011 10:25
We have structures of two states of a large multi-domain protein in which domain
movements of up to 30 degrees are observed. Is there a programme available which
attempts to determine rigid-body units and hinge regions in an 'unbiased' way?
thanks for your suggestions,
Stephen Cusack
----------
From: Matthew BOWLER
Dear Stephen,
I find DynDom very good (http://fizz.cmp.uea.ac.uk/dyndom/) otherwise the morph server (http://molmovdb.mbb.yale.edu/molmovdb/morph/) also performs similar analysis, cheers, Matt. Matthew Bowler
----------
From: Martyn Winn
DynDom version 1.5 is part of the CCP4 suite.
There is an interface for it under Program List.
Although Steve Hayward appears to have a new version DynDom3D which we
don't have. No idea if it would be better for your case.
HTH
Martyn
No comments:
Post a Comment