Thursday, 15 March 2012

Lego_auto_mainchain in COOT?

From: xiuwen zhang
Date: 15 March 2012 14:14

Dear all,

   Is there any similar function in COOT as lego_auto_mainchain command in O program? This command is quite useful to build a low resolution model (say, < 4A).

Cheers,
Xiuwen

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From: Paul Emsley
On 15/03/12 14:14, xiuwen zhang wrote:
Dear all,

  Is there any similar function in COOT as lego_auto_mainchain command in O program? This command is quite useful to build a low resolution model (say, < 4A).


I am not familiar with lego_auto_mainchain but there are 2 loop fitting tools in Coot

C alpha -> Mainchain

  http://lmb.bioch.ox.ac.uk/coot/doc/coot.html#C_002dalpha-_002d_003e-Mainchain

  http://lmb.bioch.ox.ac.uk/coot/doc/coot.html#Building-Links-and-Loops

DB Loop:

  (No good documentation)

  http://lmb.bioch.ox.ac.uk/coot/doc/coot/protein_002ddb_002dloops.html#protein_002ddb_002dloops

Extensions -> Modelling -> DB Loop...


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