Monday 16 April 2012

software to generate protein topology diagram like those available at PDBsum webserver

From: Parthasarathy Sampathkumar
Date: 16 April 2012 01:08

Dear All,

I would like to generate a topology diagram similar to the ones available for deposited entries at the PDBsum webpage (attached one such diagram here for reference) for a new structure. Is this program is available for download? 

I am aware of TopDraw. However, I am trying to analyze a ~850 a.a. structure. So, some automation would be helpful.

Thanks in advance for your help.

Best wishes,
Partha



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From: Parthasarathy Sampathkumar
Dear All,

Thanks to Herb, John, Simanshu, and Anu for link:

to generate PDBsum like topology diagrams.

Partha

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From: Parthasarathy Sampathkumar
Dear All,

Guillaume Ponchel referred me to ProOrigami (which can be installed locally) to generate protein topology diagrams:



Thanks again.

Best wishes,
Partha


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