error after install

From: Joel Tyndall
Date: 22 September 2011 23:29

Hi folks,

 

My love/hate relationship continues with linux. I have had to reinstall everything and when I install CCP4 6.2.0 It seems to work fine but upon opening a shell I get the error below and by typing ccp4 I simply get changed to the ccp4 directory.

 

*******************************************

Fatal Error: Incomplete libtbx environment\!

*******************************************

Please re-run the libtbx/configure.py command.

 

On a little searching I found some evidence of this error before but little solutions to the problem. When I run:

 

python configure.py

 

I get the error

 

bash: /opt/CCP4/Python-2.6.7/bin/python: No such file or directory

 

This file does exist.

 

I am running Ubuntu 10.10 as a guest on a windows 7 machine. I am running in a bash shell. This error occurs when nothing else is installed. The libtx/configure.py is in three places

 

/opt/CCP4/ccp4-6.2.0/lib/cctbx-utf/cctbx_sources/cctbx_project/libtx

/opt/CCP4/ccp4-6.2.0/lib/cctbx/cctbx_sources/cctbx_project/libtx

/opt/CCP4/ccp4-6.2.0/src/phaser/phaser-2.3.0/libtx

 

I recently installed CCP4 6.1.12 with no issues. Any help to solve this problem would be much appreciated

 

Joel

_________________________________

Joel Tyndall, PhD

Senior Lecturer in Medicinal Chemistry
National School of Pharmacy
University of Otago
PO Box 56 Dunedin 9054
New Zealand  

 

----------
From: Tim Gruene


Dear Joel,

reinstalling operating systems is fairly common also to other ones than
linux ;-)

The behaviour of the command 'ccp4' is actually correct for it is
aliased to
tg@shelx8:/xtal/Suites/CCP4/ccp4-6.2.0$ type -all ccp4
ccp4 is aliased to `pushd $CCP4>/dev/null'

I suppose you mean 'ccp4i' instead in order to start the CCP4 interface.

About the python:
What is the output of the command
       stat /opt/CCP4/Python-2.6.7/bin/python

Maybe you do not have executable permission.

Tim

- --
- --
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen

----------
From: Joel Tyndall

Hi Tim,

$ stat /opt/CCP4/Python-2.6.7/bin/python
 File: `/opt/CCP4/Python-2.6.7/bin/python'
 Size: 4279369         Blocks: 8360       IO Block: 4096   regular file
Device: 801h/2049d      Inode: 1189874     Links: 2
Access: (0755/-rwxr-xr-x)  Uid: (13003/ UNKNOWN)   Gid: (10602/ UNKNOWN)
Access: 2011-09-26 09:11:48.946003302 +1300
Modify: 2011-08-16 02:26:38.000000000 +1200
Change: 2011-09-22 16:24:09.857165116 +1200

It maybe that python was not installed correctly, will update after the core group gets back to me.

Cheers