to show multiple sequence alignment with sec. str.

From: sreetama das
Date: 30 January 2012 10:02

Dear All,

             Is there any module in CCP4/ other related software/servers which can show a multiple alignment of homologous sequences from a protein family, together with their secondary structures?

Thanks in advance,

regards,

sreetama

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From: Florian Brückner

Hi Sreetama,

you can use STRAP for that: http://3d-alignment.eu/. It allows you to do multible sequence alignments and use various algorithms to predict secondary structure or display secondary structure assignments of PDB entries.

Cheers

Florian

Am 30.01.2012 um 11:02 schrieb sreetama das:

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Dr. Florian Brückner

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From: Jon Agirre


ESPript is a good option too: http://espript.ibcp.fr/ESPript/ESPript/

Good luck,

Jon

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