Tuesday 20 September 2011

phaser 2.3.0 floating point exception

From: Petr Leiman
Date: 6 September 2011 08:25

Dear Randy and the Phaser team,

Phaser 2.3.0 brought us several enhancement, but similar to Alexander Schiffer's experience, Phaser has failed several times now with a floating point exception error at different stages of automated MR: it has stopped in the beginning of RF and then in a new run it stopped in the middle of TF. The remedy is to explicitly lower the resolution of the input data (that was a 1.2 A resolution data with a smallish unit cell).

I can provide the log files and the mtz file if necessary.

Sincerely,

Petr
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Petr Leiman
EPFL
IPSB-LBBS
BSP-415
CH-1015 Lausanne, Suisse
http://lbbs.epfl.ch

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From: Randy Read
Dear Petr,

Yes, please do send the log files, MTZ file and anything else needed to run the job that shows the problem, so we can track it down.  It's probably best to send them off-line.

We couldn't reproduce Alexander's problem, but he tells me that it only occurs "when the script is started from a mono application" (and I confess that I don't really know yet what that means).  Once the problem he ran into has been defined a bit better, we can look into whether it's something we can fix on our end.

Regards,

Randy Read
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Randy J. Read
Department of Haematology, University of Cambridge
Cambridge Institute for Medical Research    
Wellcome Trust/MRC Building                  
Hills Road                                  
Cambridge CB2 0XY, U.K.                       www-structmed.cimr.cam.ac.uk


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